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zhuchunyun 2025-02-06 15:43:56 +08:00
parent 108066fab2
commit c662bb03bc
17 changed files with 197 additions and 152 deletions
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5
ruoyi-admin/pom.xml
View File

@ -16,6 +16,11 @@
</description>
<dependencies>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-compress</artifactId>
<version>1.21</version> <!-- 请确认使用最新版本 -->
</dependency>
<!--腾讯短信-->
<dependency>
<groupId>com.tencentcloudapi</groupId>

79
ruoyi-admin/src/main/java/com/ruoyi/script/service/impl/PatientScriptServiceImpl.java
View File

@ -12,6 +12,11 @@ import com.ruoyi.script.mapper.PatientScriptMapper;
import com.ruoyi.script.service.PatientScriptService;
import com.ruoyi.script.util.ShellUtil;
import lombok.SneakyThrows;
import org.apache.commons.compress.archivers.ArchiveEntry;
import org.apache.commons.compress.archivers.zip.ZipArchiveEntry;
import org.apache.commons.compress.archivers.zip.ZipArchiveInputStream;
import org.apache.commons.compress.archivers.zip.ZipFile;
import org.apache.commons.compress.utils.IOUtils;
import org.apache.commons.lang3.ObjectUtils;
import org.apache.commons.lang3.RandomUtils;
import org.apache.commons.lang3.StringUtils;
@ -20,10 +25,10 @@ import org.springframework.stereotype.Service;
import javax.annotation.Resource;
import javax.servlet.http.HttpServletResponse;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.*;
import java.nio.file.Files;
import java.nio.file.Paths;
import java.nio.file.StandardCopyOption;
import java.util.*;
import java.util.List;
import java.util.concurrent.Executor;
@ -51,6 +56,42 @@ public class PatientScriptServiceImpl implements PatientScriptService {
return scriptMapper.selectList(patientScript);
}
/**
* 解压 ZIP 文件到指定文件夹
*
* @param zipFilePath 源文件 ZIP 路径
* @param destDir 解压的文件夹路径
* @throws IOException 如果发生 I/O 错误
*/
public static void unzip(String zipFilePath, String destDir) throws IOException {
File zipFile = new File(zipFilePath);
File destDirectory = new File(destDir);
if (!destDirectory.exists()) {
destDirectory.mkdirs();
}
try (ZipFile zip = new ZipFile(zipFile)) {
Enumeration<ZipArchiveEntry> entries = zip.getEntries();
while (entries.hasMoreElements()){
ZipArchiveEntry zipArchiveEntry = entries.nextElement();
if (!zipArchiveEntry.isDirectory()) {
File outFile = new File(destDirectory, zipArchiveEntry.getName());
File parent = outFile.getParentFile();
if (!parent.exists()) {
parent.mkdirs();
}
try (InputStream in = zip.getInputStream((ZipArchiveEntry) zipArchiveEntry)) {
Files.copy(in, outFile.toPath(), StandardCopyOption.REPLACE_EXISTING);
} catch (IOException e) {
throw new RuntimeException("解压文件时出错: " + zipArchiveEntry.getName(), e);
}
}
}
}
}
@Override
public Boolean save(PatientScript patientScript) throws IOException, InterruptedException {
patientScript.setCreateId(1110L);
@ -65,31 +106,33 @@ public class PatientScriptServiceImpl implements PatientScriptService {
public void run() {
if (!patientScript.getType().equals("mri")){
String unique_id = generateOtp();
String playground = "playground"+patientScript.getPatientName()+unique_id;
String playground = "playground"+unique_id;
String format = DateUtil.format(new Date(), "yyyy-MM-dd");
unzip(patientScript.getFilePath(),"/data/" +format+"/"+ playground);
Map<String, Object> shMap = new LinkedHashMap<>();
shMap.put("outPath",format+"/output-"+unique_id);
shMap.put("filePath", patientScript.getFilePath());
shMap.put("subId",unique_id);
shMap.put("fmriFileMb",format+"/"+playground+"/preprocessed/sub001/func/sub-001_task-rest_space-MNI152NLin2009cAsym_boldref.nii");
shMap.put("playground",format+"/"+playground);
shMap.put("fmriFileMb",format+"/"+playground+"/preprocessed/sub-001/func/sub-001_task-rest_space-MNI152NLin2009cAsym_boldref.nii.gz");
shMap.put("fmriRegOutFile",format+"/output-"+unique_id+"/bold_2_struct.mat");
shMap.put("fmriFileDpp",format+"/"+playground+"/preprocessed/sub001/func/sub-001_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii");
shMap.put("fmriFileDpp",format+"/"+playground+"/preprocessed/sub-001/func/sub-001_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz");
shMap.put("fmriR2t1OutFile",format+"/output-"+unique_id+"/reg2_Template.nii.gz");
shMap.put("smriFileMb",format+"/"+playground+"/preprocessed/sub001/anat/sub-001_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz");
shMap.put("smriOutFile",format+"/output-"+unique_id+"/anat2_Template.nii");
shMap.put("smriFileMb",format+"/"+playground+"/preprocessed/sub-001/anat/sub-001_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz");
shMap.put("smriOutFile",format+"/output-"+unique_id+"/anat2_Template.nii.gz");
String fmriOutPath = "/data/"+format+"/output-"+unique_id+"/fmriOut/";
shMap.put("fmriOutPath",fmriOutPath);
shMap.put("matrixPath","/data/"+format+"/output-"+unique_id+"/");
shMap.put("tr",patientScript.getRepetitionTime());
String shPath="/data/"+format+"/cpac"+"-"+unique_id+".sh";
String dealDataSh="/data/"+format+"/dealData"+"-"+unique_id+".sh";
String imgPath="/data/"+format+"/img"+"-"+unique_id+".sh";
String alignPath="/data/"+format+"/align"+"-"+unique_id+".py";
shMap.put("alignPath",alignPath);
shMap.put("fucDataPath",format+"/output-"+unique_id+"/reg2_Template.nii.gz");
//创建alignPy
createFile(shMap, alignPath,"alignTemplate.ftl");
//创建总脚本
createFile(shMap, shPath,"cpacSh.ftl");
//创建处理数据脚本
createFile(shMap, dealDataSh,"dealData.ftl");
//创建图片生成脚本
createFile(shMap, imgPath,"imgSh.ftl");
//创建路径
@ -104,13 +147,21 @@ public class PatientScriptServiceImpl implements PatientScriptService {
} else {
System.out.println("文件夹已存在，无需再次创建！");
}
//处理数据处理格式
ShellUtil.execCmd("dos2unix "+dealDataSh);
shUtil(dealDataSh,patientScript);
shMap.put("tr",patientScript.getRepetitionTime());
//创建总脚本
createFile(shMap, shPath,"cpacSh.ftl");
//处理脚本文件格式
ShellUtil.execCmd("dos2unix "+shPath);
ShellUtil.execCmd("dos2unix "+imgPath);
String status=shUtil(shPath,patientScript);
//再处理图片的生成
//处理脚本文件格式
ShellUtil.execCmd("dos2unix "+imgPath);
ShellUtil.execCmd("sh "+imgPath);
//处理脑区信息
patientScript.setResImage("/data/"+format+"/output-"+unique_id+"/Net.jpg");
@ -852,7 +903,7 @@ public class PatientScriptServiceImpl implements PatientScriptService {
p = new Paragraph();
ph = new Phrase();
ph.add(new Chunk("---------------------------------------------------------------------------------------------------------------", titleFont));//前缀
ph.add(new Chunk("---------------------------------------------------------------------------------------------", titleFont));//前缀
p.add(ph);
p.setAlignment(Element.ALIGN_LEFT);//设置对齐方式
p.setLeading(30);

41
ruoyi-admin/src/main/java/com/ruoyi/script/util/ShellUtil.java
View File

@ -1,5 +1,6 @@
package com.ruoyi.script.util;
import com.alibaba.fastjson2.JSONObject;
import com.ruoyi.script.entity.PatientScript;
import java.io.*;
@ -11,15 +12,19 @@ public class ShellUtil {
System.out.println("commandStr: " + commandStr);
ProcessBuilder processBuilder = new ProcessBuilder(commandStr);
Process process = processBuilder.start();
BufferedReader reader = new BufferedReader(new InputStreamReader(process.getInputStream()));
String line;
while ((line = reader.readLine()) != null) {
System.out.println(line);
if (line.contains("\"tr\"")&&line.contains("{")&&line.contains("}")){
System.out.println(line+"tr11111111************************************************************");
JSONObject jsonObject = JSONObject.parseObject(line);
patientScript.setRepetitionTime(jsonObject.get("tr").toString());
}
if (line.contains("brain_regions")&&line.contains("correlation")){
patientScript.setResInfo(line);
}
if (line.contains("result===")){
System.out.println(line+"result1************************************************************");
if (line.contains("1")){
@ -28,14 +33,6 @@ public class ShellUtil {
resInfo= "正常";
}
}
if (line.contains("top n connect")){
System.out.println(line+"top n connect************************************************************");
if (line.contains("1")){
resInfo= "异常";
}else {
resInfo= "正常";
}
}
}
@ -53,15 +50,25 @@ public class ShellUtil {
try {
proc = run.exec(cmd, null, null);
in = proc.getInputStream();
br = new BufferedReader(new InputStreamReader(in));
String result;
while ((result = br.readLine()) != null) {
System.out.println("job result [" + result + "]");
// 获取日志流
BufferedReader reader = new BufferedReader(new InputStreamReader(proc.getInputStream()));
String line2;
while ((line2 = reader.readLine()) != null) {
// 打印日志
System.err.println("log:"+line2);
}
// 获取错误流
BufferedReader errorReader = new BufferedReader(new InputStreamReader(proc.getErrorStream()));
String line;
while ((line = errorReader.readLine()) != null) {
// 打印错误流的内容
System.err.println("error:"+line);
}
proc.waitFor();
// 等待进程结束并获取退出码（可选）
int exitCode = proc.waitFor();
System.out.println("Exited with code: " + exitCode);
} catch (Exception e) {
e.printStackTrace();
} finally {

5
ruoyi-admin/src/main/java/com/ruoyi/system/controller/NotifyController.java
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@ -45,7 +45,7 @@ import java.util.concurrent.locks.ReentrantLock;
@Slf4j
public class NotifyController {
@Resource
private WechatPayConfig wechatPayConfig;
@Autowired
@ -53,8 +53,7 @@ public class NotifyController {
@Autowired
private UserPayInfoService payInfoService;
@Resource
private Verifier verifier;
private final ReentrantLock lock = new ReentrantLock();

9
ruoyi-admin/src/main/java/com/ruoyi/system/controller/PayController.java
View File

@ -16,7 +16,7 @@ import com.ruoyi.system.service.ISysDeptService;
import com.ruoyi.system.service.ISysUserService;
import com.ruoyi.system.service.UserPayInfoService;
import com.ruoyi.system.utils.WechatPayConfig;
import com.ruoyi.system.utils.WechatPayRequest;
import io.swagger.annotations.Api;
import io.swagger.annotations.ApiOperation;
import lombok.extern.slf4j.Slf4j;
@ -44,11 +44,10 @@ import java.util.*;
@Slf4j
public class PayController {
@Resource
private WechatPayConfig wechatPayConfig;
@Resource
private WechatPayRequest wechatPayRequest;
@Autowired
private ISysConfigService configService;
@Autowired
@ -141,7 +140,7 @@ public class PayController {
params.put("scene_info", sceneInfoMap);
String paramsStr = JSON.toJSONString(params);
log.info("请求参数 ===> {}" + paramsStr);
String resStr = wechatPayRequest.wechatHttpPost("https://api.mch.weixin.qq.com/v3/pay/transactions/jsapi",paramsStr);
String resStr = "121212";
Map<String, Object> resMap = JSONObject.parseObject(resStr, new TypeReference<Map<String, Object>>(){});
Map<String, Object> signMap = paySignMsg(resMap, WechatPayUrlEnum.JSAPI.getType());
//增加购买信息

21
ruoyi-admin/src/main/java/com/ruoyi/system/service/impl/DeptBuyRecordServiceImpl.java
View File

@ -49,10 +49,9 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
private DeptBuyRecordMapper deptBuyRecordMapper;
@Autowired
private IPurchasePackageService purchasePackageService;
@Resource
private WechatPayConfig wechatPayConfig;
@Resource
private WechatPayRequest wechatPayRequest;
// @Resource
// private WechatPayRequest wechatPayRequest;
@Autowired
private ISysConfigService sysConfigService;
@Autowired
@ -193,8 +192,7 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
DeptBuyRecord orderInfo = this.selectDeptBuyRecordById(orderId);
// 统一参数封装
Map<String, Object> params = new HashMap<>(8);
params.put("appid", wechatPayConfig.getAppId());
params.put("mchid", wechatPayConfig.getMchId());
params.put("description", "问卷调查购买费用");
params.put("out_trade_no", orderInfo.getOrderNo());
params.put("notify_url", "https://www.xishuibeishan.com/asdProject/system/buyRecord/payNotify");
@ -205,7 +203,7 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
amountMap.put("currency", "CNY");
params.put("amount", amountMap);
String paramsStr = JSON.toJSONString(params);
String resStr = wechatPayRequest.wechatHttpPost("https://api.mch.weixin.qq.com/v3/pay/transactions/native",paramsStr);
String resStr = "12121";
Map<String, Object> resMap = JSONObject.parseObject(resStr, new TypeReference<Map<String, Object>>(){});
return resMap;
}
@ -214,8 +212,7 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
DeptBuyRecord orderInfo = this.selectDeptBuyRecordById(orderId);
// 统一参数封装
Map<String, Object> params = new HashMap<>(8);
params.put("appid", wechatPayConfig.getAppId());
params.put("mchid", wechatPayConfig.getMchId());
params.put("description", "问卷调查续费");
params.put("out_trade_no", orderInfo.getOrderNo());
params.put("notify_url", "https://www.xishuibeishan.com/asdProject/system/buyRecord/chargeNotify");
@ -226,7 +223,7 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
amountMap.put("currency", "CNY");
params.put("amount", amountMap);
String paramsStr = JSON.toJSONString(params);
String resStr = wechatPayRequest.wechatHttpPost("https://api.mch.weixin.qq.com/v3/pay/transactions/native",paramsStr);
String resStr = "12121";
Map<String, Object> resMap = JSONObject.parseObject(resStr, new TypeReference<Map<String, Object>>(){});
return resMap;
}
@ -240,7 +237,7 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
@Override
public Map<String, String> payNotify(JSONObject jsonObject) {
try {
String key = wechatPayConfig.getApiV3Key();
String key = "1111";
String json = jsonObject.toString();
String associated_data = (String) JSONUtil.getByPath(JSONUtil.parse(json), "resource.associated_data");
String ciphertext = (String) JSONUtil.getByPath(JSONUtil.parse(json), "resource.ciphertext");
@ -318,7 +315,7 @@ public class DeptBuyRecordServiceImpl implements IDeptBuyRecordService
@Override
public Map<String, String> chargeNotify(JSONObject jsonObject) {
try {
String key = wechatPayConfig.getApiV3Key();
String key = "1212";
String json = jsonObject.toString();
String associated_data = (String) JSONUtil.getByPath(JSONUtil.parse(json), "resource.associated_data");
String ciphertext = (String) JSONUtil.getByPath(JSONUtil.parse(json), "resource.ciphertext");

126
ruoyi-admin/src/main/java/com/ruoyi/system/utils/WechatPayConfig.java
View File

@ -27,10 +27,10 @@ import java.security.PrivateKey;
* @Author:
* @Description:
**/
@Component
//@Component
@Data
@Slf4j
@ConfigurationProperties(prefix = "wxpay")
//@ConfigurationProperties(prefix = "wxpay")
public class WechatPayConfig {
/**
* 应用编号
@ -92,69 +92,69 @@ public class WechatPayConfig {
return PemUtil.loadPrivateKey(inputStream);
}
/**
* 获取证书管理器实例
* @return
*/
@Bean
public Verifier getVerifier() throws GeneralSecurityException, IOException, HttpCodeException, NotFoundException {
log.info("获取证书管理器实例");
//获取商户私钥
PrivateKey privateKey = getPrivateKey(keyPemPath);
//私钥签名对象
PrivateKeySigner privateKeySigner = new PrivateKeySigner(serialNo, privateKey);
//身份认证对象
WechatPay2Credentials wechatPay2Credentials = new WechatPay2Credentials(mchId, privateKeySigner);
// 使用定时更新的签名验证器，不需要传入证书
CertificatesManager certificatesManager = CertificatesManager.getInstance();
certificatesManager.putMerchant(mchId,wechatPay2Credentials,apiV3Key.getBytes(StandardCharsets.UTF_8));
return certificatesManager.getVerifier(mchId);
}
// /**
// * 获取证书管理器实例
// * @return
// */
// @Bean
// public Verifier getVerifier() throws GeneralSecurityException, IOException, HttpCodeException, NotFoundException {
//
// log.info("获取证书管理器实例");
//
// //获取商户私钥
// PrivateKey privateKey = getPrivateKey(keyPemPath);
//
// //私钥签名对象
// PrivateKeySigner privateKeySigner = new PrivateKeySigner(serialNo, privateKey);
//
// //身份认证对象
// WechatPay2Credentials wechatPay2Credentials = new WechatPay2Credentials(mchId, privateKeySigner);
//
// // 使用定时更新的签名验证器，不需要传入证书
// CertificatesManager certificatesManager = CertificatesManager.getInstance();
// certificatesManager.putMerchant(mchId,wechatPay2Credentials,apiV3Key.getBytes(StandardCharsets.UTF_8));
//
// return certificatesManager.getVerifier(mchId);
// }
/**
* 获取支付http请求对象
* @param verifier
* @return
*/
@Bean(name = "wxPayClient")
public CloseableHttpClient getWxPayClient(Verifier verifier) {
// /**
// * 获取支付http请求对象
// * @param verifier
// * @return
// */
// @Bean(name = "wxPayClient")
// public CloseableHttpClient getWxPayClient(Verifier verifier) {
//
// //获取商户私钥
// PrivateKey privateKey = getPrivateKey(keyPemPath);
//
// WechatPayHttpClientBuilder builder = WechatPayHttpClientBuilder.create()
// .withMerchant(mchId, serialNo, privateKey)
// .withValidator(new WechatPay2Validator(verifier));
//
// // 通过WechatPayHttpClientBuilder构造的HttpClient，会自动的处理签名和验签，并进行证书自动更新
// return builder.build();
// }
//获取商户私钥
PrivateKey privateKey = getPrivateKey(keyPemPath);
WechatPayHttpClientBuilder builder = WechatPayHttpClientBuilder.create()
.withMerchant(mchId, serialNo, privateKey)
.withValidator(new WechatPay2Validator(verifier));
// 通过WechatPayHttpClientBuilder构造的HttpClient，会自动的处理签名和验签，并进行证书自动更新
return builder.build();
}
/**
* 获取HttpClient，无需进行应答签名验证，跳过验签的流程
*/
@Bean(name = "wxPayNoSignClient")
public CloseableHttpClient getWxPayNoSignClient(){
//获取商户私钥
PrivateKey privateKey = getPrivateKey(keyPemPath);
//用于构造HttpClient
WechatPayHttpClientBuilder builder = WechatPayHttpClientBuilder.create()
//设置商户信息
.withMerchant(mchId, serialNo, privateKey)
//无需进行签名验证、通过withValidator((response) -> true)实现
.withValidator((response) -> true);
// 通过WechatPayHttpClientBuilder构造的HttpClient，会自动的处理签名和验签，并进行证书自动更新
return builder.build();
}
// /**
// * 获取HttpClient，无需进行应答签名验证，跳过验签的流程
// */
// @Bean(name = "wxPayNoSignClient")
// public CloseableHttpClient getWxPayNoSignClient(){
//
// //获取商户私钥
// PrivateKey privateKey = getPrivateKey(keyPemPath);
//
// //用于构造HttpClient
// WechatPayHttpClientBuilder builder = WechatPayHttpClientBuilder.create()
// //设置商户信息
// .withMerchant(mchId, serialNo, privateKey)
// //无需进行签名验证、通过withValidator((response) -> true)实现
// .withValidator((response) -> true);
//
// // 通过WechatPayHttpClientBuilder构造的HttpClient，会自动的处理签名和验签，并进行证书自动更新
// return builder.build();
// }
}

2
ruoyi-admin/src/main/java/com/ruoyi/system/utils/WechatPayRequest.java
View File

@ -19,7 +19,7 @@ import java.io.IOException;
* @Author:
* @Description:
**/
@Component
@Slf4j
public class WechatPayRequest {
@Resource

6
ruoyi-admin/src/main/resources/application-druid.yml
View File

@ -6,13 +6,13 @@ spring:
druid:
# 主库数据源
master:
url: jdbc:mysql://81.70.190.166:3306/asd-project?useUnicode=true&characterEncoding=utf8&zeroDateTimeBehavior=convertToNull&useSSL=true&serverTimezone=GMT%2B8
url: jdbc:mysql://127.0.0.1:3306/asd-project?useUnicode=true&characterEncoding=utf8&zeroDateTimeBehavior=convertToNull&useSSL=true&serverTimezone=GMT%2B8
# username: root
# password: qqzcy@1014
# url: jdbc:mysql://81.70.190.166:3306/asd-project?useUnicode=true&characterEncoding=utf8&zeroDateTimeBehavior=convertToNull&useSSL=true&serverTimezone=GMT%2B8
# url: jdbc:mysql://81.70.190.166:3306/asd-project?useUnicode=true&characterEncoding=utf8&zeroDateTimeBehavior=convertToNull&useSSL=true&serverTimezone=GMT%2B8
username: root
password: qqzcy@1014
username: mysqlRoot
password: QQzcy@1014
# 从库数据源
# slave:
# # 从数据源开关/默认关闭

4
ruoyi-admin/src/main/resources/application.yml
View File

@ -64,9 +64,9 @@ spring:
servlet:
multipart:
# 单个文件大小
max-file-size: 50MB
max-file-size: 5000000MB
# 设置总上传的文件大小
max-request-size: 100MB
max-request-size: 5000000MB
# 服务模块
devtools:
restart:

2
ruoyi-admin/src/main/resources/mapper/system/PatientScriptMapper.xml
View File

@ -53,7 +53,7 @@ PUBLIC "-//mybatis.org//DTD Mapper 3.0//EN"
<if test="scanDoctor != null and scanDoctor != ''"> and scan_doctor like concat('%',#{scanDoctor},'%') </if>
<if test="isAll != null and isAll != ''"> and is_all= #{isAll} </if>
</where>
order by scan_time desc
order by create_time desc
</select>
<select id="getById" resultMap="PatientScriptResult">
select * from patient_script

22
ruoyi-admin/src/main/resources/static/cpacSh.ftl
View File

@ -1,28 +1,6 @@
#!/bin/bash
echo "Hello, output-43207!"
cd /data
source ~/.bashrc
mkdir ${playground}
echo "复制源文件到指定个体下"
cp ${filePath} ${playground}/file.zip
echo "解压源文件"
cd ${playground}
unzip file.zip
cd /data
echo "执行源文件处理脚本"
python dealTest.py --base_dir ${playground} --output_dir ${playground}/BIDS_output
echo "通过源文件进行二次处理"
fmriprep-docker ${playground}/BIDS_output/sub-001 ${playground}/preprocessed/ participant --participant-label 001 --fs-license-file /data/license.txt --fs-no-reconall
echo "激活py环境"
export PYTHONPATH=/usr/local/python3/lib/python3.8/site-packages:$PYTHONPATH
echo "cpac handle end!"
conda activate myenv
export PYTHONPATH=/root/anaconda3/envs/myenv/lib/python3.7/site-packages:$PYTHONPATH
python ${alignPath}

10
ruoyi-admin/src/main/resources/static/dealData.ftl Normal file
View File

@ -0,0 +1,10 @@
#!/bin/bash
cd /data
cd /data
echo "执行源文件处理脚本"
python dealTest.py --base_dir ${playground} --output_dir ${playground}/BIDS_output --json_dir ${playground}/BIDS_output/sub-001/func/sub-001_task-rest_bold.json
rm -rf ./${playground}/BIDS_output/config.json
cp ./README ${playground}/BIDS_output/
echo "通过源文件进行二次处理"
docker run --rm -e DOCKER_VERSION_8395080871=27.3.1 -v /data/license.txt:/opt/freesurfer/license.txt:ro -v /data/${playground}/BIDS_output:/data:ro -v /data/${playground}/preprocessed:/out nipreps/fmriprep:23.2.3 /data /out participant --participant-label 001 --fs-no-reconall

3
ruoyi-admin/src/main/resources/static/imgSh.ftl
View File

@ -1,8 +1,7 @@
#!/bin/bash
echo "Hello, output-43207!"
source ~/.bashrc
cd ${matrixPath}
rmatlab -nodesktop -nodisplay -r rtmalbFile
matlab -nodesktop -nodisplay -r rtmalbFile
echo "main handle end!"

2
ruoyi-common/src/main/java/com/ruoyi/common/utils/file/FileUploadUtils.java
View File

@ -26,7 +26,7 @@ public class FileUploadUtils
/**
* 默认大小 50M
*/
public static final long DEFAULT_MAX_SIZE = 50 * 1024 * 1024;
public static final long DEFAULT_MAX_SIZE = 5000 * 1024 * 1024;
/**
* 默认的文件名最大长度 100

2
ruoyi-ui/src/components/BrainUpload/index.vue
View File

@ -45,7 +45,7 @@
// 大小限制(MB)
fileSize: {
type: Number,
default: 50,
default: 50000000,
},
// 文件类型, 例如['png', 'jpg', 'jpeg']
fileType: {

10
ruoyi-ui/src/views/system/shMenu/index.vue
View File

@ -120,9 +120,9 @@
<el-form-item label="审核医生" prop="shDoctor">
<el-input v-model="form.shDoctor" placeholder="审核医生" />
</el-form-item>
<el-form-item label="TR" prop="repetitionTime">
<el-input v-model="form.repetitionTime" placeholder="TR" />
</el-form-item>
<!-- <el-form-item label="TR" prop="repetitionTime">-->
<!-- <el-input v-model="form.repetitionTime" placeholder="TR" />-->
<!-- </el-form-item>-->
<!-- <el-form-item label="扫描顺序" prop="scanningOrder">-->
<!-- <el-select v-model="form.scanningOrder" placeholder="请选择扫描顺序">-->
@ -390,13 +390,13 @@
if (this.form.recordId != null) {
updateRecord(this.form).then(response => {
this.$modal.msgSuccess("修改成功");
this.open = false;
//this.open = false;
this.getList();
});
} else {
addRecord(this.form).then(response => {
this.$modal.msgSuccess("提交成功,请耐心等待结果");
this.open = false;
//this.open = false;
this.getList();
});
}